!Name=Torres et al 2010 !ExptSetNo=6202 !Description=This is the dataset accompanying Identification of Aneuploidy-tolerating Mutations Eduardo M. Torres, Noah Dephoure, Amudha Panneerselvam, Cheryl Tucker, Charles Whittaker, Steven P. Gygi, Maitreya Dunham, and Angelika Amon Aneuploidy causes a proliferative disadvantage in all cells analyzed to date, yet this condition is associated with a disease characterized by unabated proliferative potential, cancer. The mechanisms that allow cancer cells to tolerate the adverse effects of aneuploidy are not known. To probe this question, we identified aneuploid yeast strains with high proliferative abilities and characterized their genetic alterations. We found both strain-specific genetic alterations and mutations shared between different aneuploid strains. One such mutation, a loss of function mutation in the gene encoding the deubiquitinating enzyme UBP6, improves growth rates in four different aneuploid yeast strains. Our data further suggest that deletion of UBP6 attenuates the effects of aneuploidy on cellular protein composition. Our results demonstrate the existence of aneuploidy-tolerating mutations that improve the fitness of multiple different aneuploidies and highlight the importance of ubiquitin-proteasomal degradation in suppressing the adverse effects of aneuploidy. !Name=0 WT batch RNA !Exptid=111695 !Name=0 Dis V batch RNA !Exptid=111696 !Name=0 Dis V-14.1 batch RNA !Exptid=111697 !Name=0 Dis V-14.2 batch RNA !Exptid=111698 !Name=0 Dis VIII batch RNA !Exptid=111699 !Name=0 Dis VIII-14.1 batch RNA !Exptid=111700 !Name=0 Dis IX batch RNA !Exptid=111701 !Name=0 Dis IX-14.1 batch RNA !Exptid=111702 !Name=0 Dis XI batch RNA !Exptid=111708 !Name=0 Dis XI-14.1 batch RNA !Exptid=111709 !Name=0 Dis XI-14.2 batch RNA !Exptid=111710 !Name=0 Dis XIV batch RNA !Exptid=111711 !Name=0 Dis XIV-14.2 batch RNA !Exptid=111712 !Name=0 Dis XVI batch RNA !Exptid=111713 !Name=0 Dis XVI-14.1 batch RNA !Exptid=111714 !Name=0 Dis XVI-14.2 batch RNA !Exptid=111715 !Name=AA Disome 5 (14479) P-lim Chemostat RNA 4x44k array !Exptid=106460 !Name=AA Evolved Disome 10.2 c1 P-lim Chemostat RNA !Exptid=106461 !Name=AA Evolved Disome 9.1 c1 P-lim Chemostat RNA 4x44k !Exptid=106300 !Name=AA Evolved Disome 5.1 c1 P-lim Chemostat RNA 4x44k !Exptid=106301 !Name=AA Evolved Disome 10.1 c1 P-lim Chemostat RNA 4x44k !Exptid=106302 !Name=AA Evolved Disome 5.2 c1 P-lim Chemostat RNA 4x44k !Exptid=106303 !Name=AA Evolved Disome 8.1 c1 P-lim Chemostat RNA 4x44k !Exptid=106304 !Name=AA Evolved Disome 8.2 c1 P-lim Chemostat RNA 4x44k !Exptid=106305 !Name=AA Evolved Disome 9.2 c1 P-lim Chemostat RNA 4x44k !Exptid=106307 !Name=AA Evolved Disome 11.2 c1 P-lim Chemostat RNA 4x44k !Exptid=106287 !Name=AA Evolved Disome 14.2 c1 P-lim Chemostat RNA 4x44k !Exptid=106288 !Name=AA Evolved Disome 13.1 c1 P-lim Chemostat RNA 4x44k !Exptid=106289 !Name=AA Evolved Disome 13.2 c1 P-lim Chemostat RNA 4x44k !Exptid=106290 !Name=0 Dis I-9.1 (A25034) !Exptid=111691 !Name=0 Dis I-9.2 (A25035) !Exptid=112818 !Name=0 Dis II-9.1 (A25036) !Exptid=111692 !Name=0 Dis II-9.2 (A25037) !Exptid=111693 !Name=0 Dis IV-9.1 (A25038) !Exptid=107819 !Name=0 Dis IV-9.2 (A25039) !Exptid=107820 !Name=0 Dis V-9.1 (A25040) !Exptid=107822 !Name=0 Dis V-9.2 (A25041) !Exptid=107823 !Name=0 Dis VIII-9.1 (A25042) !Exptid=111639 !Name=0 Dis VIII-9.2 (A25043) !Exptid=111640 !Name=0 Dis IX-9.1 (A25044) !Exptid=111641 !Name=0 Dis IX-9.2 (A25045) !Exptid=111642 !Name=0 Dis X-9.1 (25046) !Exptid=111631 !Name=0 Dis X-9.2 (25047) !Exptid=111632 !Name=0 Dis XI-9.1 (A25048) !Exptid=108054 !Name=0 Dis XI-9.2 (A25049) !Exptid=108055 !Name=0 Dis XII-9.1 (A25050) !Exptid=111479 !Name=0 Dis XII-9.2 (A25051) !Exptid=111480 !Name=0 Dis XIII-9.1 (A25052) !Exptid=108056 !Name=0 Dis XIII-9.2 (A25053) !Exptid=108057 !Name=0 Dis XIV-9.1 (A25054) !Exptid=108058 !Name=0 Dis XIV-9.2 (A25055) !Exptid=108059 !Name=0 Dis XV-9.1 (A25056) !Exptid=111484 !Name=0 Dis XV-9.2 (A25057) !Exptid=111478 !Name=0 Dis XVI-9.1 (A25058) !Exptid=108060 !Name=0 Dis XVI-9.2 (A25059) !Exptid=108061 !Name=0 Dis XI-14.1 (A25074) !Exptid=107817 !Name=0 Dis XII-14.2 (A25077) !Exptid=111477 !Name=0 Dis I-E256X (A22367) !Exptid=110475 !Name=0 Dis I-GFP (A21955) !Exptid=108981 !Name=0 Dis I-UBP6∆ (A22025) !Exptid=110290 !Name=0 Dis I-URA3 (A23505) !Exptid=110455 !Name=0 Dis II-E256X (A22368) !Exptid=110476 !Name=0 Dis II-GFP (A21956) !Exptid=108982 !Name=0 Dis II-UBP6∆ (A22026) !Exptid=110197 !Name=0 Dis II-URA3 (A23506) !Exptid=110285 !Name=0 Dis IV-E256X (A22369) !Exptid=110555 !Name=0 Dis IV-GFP (A21957) !Exptid=110200 !Name=0 Dis IV-UBP6∆ (A22027) !Exptid=110557 !Name=0 Dis IX-E256X (A22387) !Exptid=110479 !Name=0 Dis IX-GFP (A21960) !Exptid=108986 !Name=0 Dis IX-UBP6∆ (A22030) !Exptid=109850 !Name=0 Dis IX-ubp6-CA !Exptid=111791 !Name=0 Dis IX-URA3 (A23510) !Exptid=110457 !Name=0 Dis V-∆ubp6-cup1-UBI4 (A25098) !Exptid=111913 !Name=0 Dis V-E256X (A22370) !Exptid=110477 !Name=0 Dis V-GFP (A21958) !Exptid=111690 !Name=0 Dis V-GFP-cup1-UBI4 (A25127) !Exptid=112336 !Name=0 Dis V-lys2 (A23489) !Exptid=110494 !Name=0 Dis V-rpn6 !Exptid=112814 !Name=0 Dis V-UBP6∆ (A22028) !Exptid=109847 !Name=0 Dis V-UBP6∆-lys2 (A23499) !Exptid=111134 !Name=0 Dis V-URA3 (A23508) !Exptid=110456 !Name=0 Dis VIII-E256X (A22371) !Exptid=110478 !Name=0 Dis VIII-E256X-cup1-UBI4 (A25131) !Exptid=112467 !Name=0 Dis VIII-GFP (A21959) !Exptid=108985 !Name=0 Dis VIII-GFP-cup1-UBI4 (A25128) !Exptid=112337 !Name=0 Dis VIII-rpn6 !Exptid=112815 !Name=0 Dis VIII-UBP6∆ (A22029) !Exptid=109849 !Name=0 Dis VIII-ubp6CA !Exptid=111790 !Name=0 Dis VIII-URA3 (A23509) !Exptid=110287 !Name=0 Dis XI-∆ubp6-cup1-UBI4 (A25101) !Exptid=112213 !Name=0 Dis XI-E256X (A22390) !Exptid=110480 !Name=0 Dis XI-E256X-cup1-UBI4 (A25136) !Exptid=111797 !Name=0 Dis XI-E256X-cup1-UBI4 (A25136)a !Exptid=112468 !Name=0 Dis XI-GFP (A21962) !Exptid=108973 !Name=0 Dis XI-GFP-cup1-UBI4 (A25129) !Exptid=112338 !Name=0 Dis XI-rpn6 !Exptid=112816 !Name=0 Dis XI-UBP6∆ (A22032) !Exptid=110169 !Name=0 Dis XI-ubp6CA !Exptid=111792 !Name=0 Dis XI-URA3 (A23512) !Exptid=110288 !Name=0 Dis XII-E256X (A22391) !Exptid=110481 !Name=0 Dis XII-GFP (A21963) !Exptid=110202 !Name=0 Dis XII-UBP6∆ (A22033) !Exptid=110499 !Name=0 Dis XIII-GFP (A21964) !Exptid=110178 !Name=0 Dis XIII-UBP6∆ (A22034) !Exptid=110172 !Name=0 Dis XIII-URA3 (A23514) !Exptid=110458 !Name=0 Dis XIV-E256X (A22393) !Exptid=111360 !Name=0 Dis XIV-GFP (A21965) !Exptid=108308 !Name=0 Dis XIV-UBP6∆ (A22035) !Exptid=110174 !Name=0 Dis XIV-URA3 (A23515) !Exptid=110459 !Name=0 Dis XV-E256X (A22394) !Exptid=110556 !Name=0 Dis XV-GFP (A21966) !Exptid=108978 !Name=0 Dis XV-UBP6∆ (A22036) !Exptid=110175 !Name=0 Dis XV-URA3 (A23516) !Exptid=111483 !Name=0 Dis XVI-GFP (A21967) !Exptid=108980 !Name=0 Dis XVI-rpn6 !Exptid=112817 !Name=0 Dis XVI-UBP6∆ (A22037) !Exptid=110176 !Name=0 Dis XVI-URA3 (A23517) !Exptid=110461 !Name=0 WT-E256X (A22366) !Exptid=110474 !Name=0 WT-GFP (A21954) !Exptid=108987 !Name=0 WT-UBP6∆ (A22024) !Exptid=109851