!Name=final n2 and hawaii !ExptSetNo=5601 !Description=RNA was labeled using the Low RNA Input Fluorescent Linear Amplification Kit (Agilent, San Jose CA) according to the manufacturer's instructions. The reference used is a 50:50 N2:CB4856 combination of RNA isolated from separate plates of hermaphrodite only mixed-stage populations. Four replicates of each time point were completed. For each time point two of the experimental samples were labeled with Cy3 while two were labeled with Cy5. 850 ng of an experimental sample and of the reference were hybridized to Agilent C. elegans 4?44k oligo microarrays for each array, according to the manufacturer's protocol. Samples were loaded into each array randomly on the slide, so that each slide did not contain more than one sample from each time point. The slides were scanned using an Agilent DNA microarray scanner and the data was extracted using Agilent Feature Extractor (version 9.5). !Name=Hawaii eggs A Cy3 vs Ref Cy5 !Exptid=106600 !Name=Hawaii eggs B Cy3 vs Ref Cy5 !Exptid=106603 !Name=Ref Cy3 vs H Egg Cy5 !Exptid=107803 !Name=Ref Cy3 vs H Egg D Cy5 !Exptid=107805 !Name=HL1 8/27 Cy5 vs Ref Cy3 !Exptid=107228 !Name=Hawaii L1 6/17 Cy3 vs Ref Cy5 !Exptid=106602 !Name=Hawaii L1 6/7 Cy3 vs Ref Cy5 !Exptid=106595 !Name=Ref Cy3 vs Hawaii L1 Cy5* !Exptid=106150 !Name=Ref Cy3 vs Hawaii L2 (redo) Cy5 !Exptid=106227 !Name=HL2 8/27 Cy5 vs Ref Cy3 !Exptid=107250 !Name=Hawaii L2 6/17 Cy3 vs Ref Cy5 !Exptid=106601 !Name=Hawaii L2B 6/27 Cy3 vs. Ref Cy5 !Exptid=106710 !Name=Ref Cy3 vs Hawaii L3 (redo) Cy5 !Exptid=106228 !Name=HL3 8/27 Cy3 vs Ref Cy5 !Exptid=107235 !Name=Hawaii L3A 6/27 Cy3 vs Ref Cy5 !Exptid=106714 !Name=Hawaii L3B 6/27 Cy5 vs Ref Cy3 !Exptid=106713 !Name=HL4A Cy3 vs Ref6 Cy5 !Exptid=108632 !Name=HL4B 8/27 Cy5 vs Ref Cy3 !Exptid=107256 !Name=HL4B Cy5 vs Ref8 Cy3 !Exptid=108633 !Name=Hawaii L4 A Cy3 vs. Ref Cy5 !Exptid=106597 !Name=Ref Cy5 vs Hawaii 8/3/07 Cy3 !Exptid=107018 !Name=Ref Cy5 vs Hawaii C (10/17) Cy3 !Exptid=108118 !Name=Ref Cy3 vs Hawaii (080907) Cy5 !Exptid=107065 !Name=Ref Cy3 vs Hawaii A (10/17) Cy5 !Exptid=108116 !Name=Negg 7/19C Cy 5 vs Ref Cy3 !Exptid=107242 !Name=Ref Cy5 vs N Egg A Cy3 !Exptid=107804 !Name=Ref Cy5 vs N Egg C Cy3 !Exptid=107806 !Name=Ref Cy3 vs N Egg B Cy5 !Exptid=107802 !Name=N2L1 6/17 Cy3 vs Ref Cy5 !Exptid=106604 !Name=N2L1 6/7 Cy3 vs Ref Cy5 !Exptid=106599 !Name=N2L1 8/27 Cy5 vs Ref Cy3 !Exptid=107258 !Name=Ref Cy3 vs N2 YA L1s !Exptid=105989 !Name=Ref Cy3 vs. N2 L2 Cy5 !Exptid=106146 !Name=N2L2 6/15 Cy3 vs. Ref Cy5 !Exptid=106598 !Name=N2L2A 6/27 Cy3 vs. Ref Cy5 !Exptid=106707 !Name=N2L2B 8/27 Cy 5 vs Ref Cy3 !Exptid=107229 !Name=N2 L3 cy3 vs Ref cy5 !Exptid=107366 !Name=N2L3B 6/27 Cy5 vs. Ref Cy3 !Exptid=106712 !Name=N2 L3A cy3 vs. Ref Cy5 !Exptid=107368 !Name=Ref Cy3 vs N2 L3 Cy5 !Exptid=106147 !Name=Ref Cy3 vs N2 L4 Cy5 !Exptid=106148 !Name=N2 L4 cy3 vs. Ref Cy5 !Exptid=107367 !Name=N2L4 6/15 Cy3 vs Ref Cy5 !Exptid=106596 !Name=N2L4B 6/27 Cy5 vs. Ref Cy3 !Exptid=106711 !Name=Ref Cy3 vs N2 D 101907 Cy5 !Exptid=108046 !Name=Ref Cy3 vs RIL N2 YA (022307) Cy5 !Exptid=105736 !Name=Ref Cy5 vs N2 (080907) Cy3 !Exptid=107063 !Name=Ref Cy5 vs N2 B 101907 Cy3 !Exptid=108044